Algorithms and Framework for Computing 2-body Statistics on GPUs

Abstract
Various types of two-body statistics (2-BS) are regarded as essential components of data analysis in many scientific and computing domains. However, the quadratic complexity of these computations hinders timely processing of data. Therefore, use of modern parallel hardware has become an obvious direction on this topic. This paper presents our recent work in designing and optimizing parallel algorithms for 2-BS computation on Graphics Processing Units (GPUs). Although the typical 2-BS problems can be summarized into a straightforward parallel computing pattern, traditional wisdom from (general) parallel computing often falls short in delivering the best possible performance. Thus, we present a suite of techniques to decompose 2-BS problems and methods for effective use of computing resources on GPUs. We also develop analytical models that guide us towards the best parameters of our GPU program. As a result, we achieve the design of highly-optimized 2-BS algorithms that significantly outperform the best known GPU and CPU implementations. Although 2-BS problems share the same core computations, each 2-BS problem however carries its own characteristics that calls for different strategies in code optimization. For that, we develop a software framework that automatically generates high-performance GPU code based on a few parameters and short primer code input.

Bio
Yicheng Tu received a Bachelor's degree in horticulture from Beijing Agricultural University, China, and MS and PhD degrees in computer science from Purdue University. He is currently an associate professor in the Department of Computer Science & Engineering at the University of South Florida (USF). His research interest is in energy-efficient database systems, scientific data management, high performance computing and data stream management systems. He received a CAREER award from US National Science Foundation (NSF) in 2013, an Outstanding Faculty Award (2013) and a Research Achievement Award (2014) from USF. He is a senior member of both IEEE and ACM.